PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004510894.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MIKC_MADS
Protein Properties Length: 221aa    MW: 25447 Da    PI: 10.1886
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004510894.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.91.8e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien + rqvtfskRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s
  XP_004510894.1  9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFAS 59
                    79***********************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.931161IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-41160IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
CDDcd002651.17E-39373No hitNo description
SuperFamilySSF554551.44E-32388IPR002100Transcription factor, MADS-box
PfamPF003193.6E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-313859IPR002100Transcription factor, MADS-box
PfamPF014869.2E-2685173IPR002487Transcription factor, K-box
PROSITE profilePS5129714.88689179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIVFSP RGKLYEFASS  60
SITGSIERYR SHTRTNNTST PASVDQNTQA QLKEESQHMM KKIDLLEASK RKLLGQGLGS  120
CSLDELQKIE QQLERSISSI RTKKNQIFRE QIEQLKEKEK TLIAENIRLS EKYDKFSQPA  180
KKDERENLHE PFAESSPRSD VETELFIGLP ETRTWRISPK I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A2e-18384283Myocyte-specific enhancer factor 2A
3kov_B2e-18384283Myocyte-specific enhancer factor 2A
3kov_I2e-18384283Myocyte-specific enhancer factor 2A
3kov_J2e-18384283Myocyte-specific enhancer factor 2A
3mu6_A2e-18372271Myocyte-specific enhancer factor 2A
3mu6_B2e-18372271Myocyte-specific enhancer factor 2A
3mu6_C2e-18372271Myocyte-specific enhancer factor 2A
3mu6_D2e-18372271Myocyte-specific enhancer factor 2A
3p57_A2e-18384283Myocyte-specific enhancer factor 2A
3p57_B2e-18384283Myocyte-specific enhancer factor 2A
3p57_C2e-18384283Myocyte-specific enhancer factor 2A
3p57_D2e-18384283Myocyte-specific enhancer factor 2A
3p57_I2e-18384283Myocyte-specific enhancer factor 2A
3p57_J2e-18384283Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0534781e-174BT053478.1 Medicago truncatula clone MTYFP_FQ_FR_FS1G-E-5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510894.11e-162PREDICTED: MADS-box protein SOC1
RefseqXP_012574216.11e-162PREDICTED: MADS-box protein SOC1
SwissprotO646452e-85SOC1_ARATH; MADS-box protein SOC1
TrEMBLA0A072TND61e-121A0A072TND6_MEDTR; MADS-box transcription factor
TrEMBLA0A072TQ921e-121A0A072TQ92_MEDTR; MADS-box transcription factor
STRINGGLYMA07G08831.11e-106(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66630102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.11e-86AGAMOUS-like 20